Recent research highlights | SOKENDAI School of Advanced Sciences Department of Evolutionary Studies of Biosystems

2021
2020

Papers and Publications in 2021

Hayakawa T, Terahara M, Fujito NT, Matsunaga T, Teshima KM, Hane M, Kitajima K, Sato C, Takahata N, Satta Y. (2021)
Lower promoter activity of the ST8SIA2 gene has been favored in evolving human collective brains
PLOS ONE 16: e0259897.
Dornburg A, Ota T, Criscitiello MF, Salinas I, Sunyer JO, Magadán S, Boudinot P, Xu Z, Flajnik MF, Singer A, Gambón-Deza F, Hansen JD, Yoder JA. (2021)
From IgZ to IgT: A Call for a Common Nomenclature for Immunoglobulin Heavy Chain Genes of Ray-Finned Fish.
Zebrafish 18: 343-345
Bigoni F, Tanabe H, Ikeya K, Nobayashi A (2021)
Integrated Anthropology: a dialogue between subdisciplines and museums
Museologia Scientifica nuova serie 15, 89-95
Nagaya H. Stewart F. Kinoshita M. (2021)
Swallowtail butterflies use multiple visual cues to select ovipoisition site
Insects 12 (11) 10
Takahashi-Kariyazono S, Terai Y. (2021)
Two divergent haplogroups of a sacsin-like gene in Acropora corals
Scientific Reports 11: 23018
Sakamoto T, Innan H (2022)
Muller's ratchet of the Y chromosome with gene conversion
Genetics 220, iyab204
Satoh S (2021)
First Report of Maternal Interference Behaviour towards Sibling Aggression in the Shell-brooding Cichlid Lamprologus ornatipinnis Cichlidae
Journal of Ichthyology 61,992-996
Gojobori J, Arakawa N, Xiayire X, Matsumoto Y, Matsumura S, Hongo H, Ishiguro N, Terai Y. (2021)
The Japanese wolf is most closely related to modern dogs and its ancestral genome has been widely inherited by dogs throughout East Eurasia
bioRxiv DOI:10.1101/2021.10.10.463851
Satoh A, Takasu M, Yano K, Terai Y. (2021)
De novo assembly and annotation of the mangrove cricket genome
BMC Research Notes 14, 387
Nishihara H, Stanyon R, Tanabe H, Koga A (2021)
Replacement of owl monkey centromere satellite by a newly evolved variant was a recent and rapid process
Genes to Cells 26, 979-986
Saitou M, Resendez S, Pradhan AJ, Wu F, Lie NC, Hall NJ, Zhu Q, Reinholdt L, Satta Y, Nakagome S, Hanchard NA, Churchill G, Lee C, Atilla-Gokcumen GE, Mu X, Gokcumen O. (2021)
Sex-specific phenotypic effects and evolutionary history of an ancient polymorphic deletion of the human growth hormone receptor
Sci. Adv. 7 : eabi4476
Mullon C, Wakano JY, Ohtsuki H (2021)
Coevolutionary dynamics of genetic traits and their long-term extended effects under non-random interactions
Journal of Theoretical Biology 525, 110750
Tsutaya T, Yoneda M (2021)
Carbon and nitrogen stable isotopic data of premodern human skeletons from mainland Japan and the Ryukyu islands
Data in Brief 38, 107359
Buffenstein R, Amoroso V, Andziak B, Avdieiev S, Azpurua J, Barker AJ, Bennett NC, Brieﾃｱo-Enrﾃｭquez MA, Bronner GN, Coen C, Delaney MA, Dengler-Crish CM, Edrey YH, Faulkes CG, Frankel D, Friedlander G, Gibney PA, Gorbunova V, Hine C, Holmes MM, Jarvis JUM, Kawamura Y, Kutsukake N, Kenyon C, Khaled WT, Kikusui T, Kissil J, Lagestee S, Larson J, Lauer A, Lavrenchenko LA, Lee A, Levitt JB, Lewin GR, Lewis Hardell KN, Lin TD, Mason MJ, McCloskey D, McMahon M, Miura K, Mogi K, Narayan V, O'Connor TP, Okanoya K, O'Riain MJ, Park TJ, Place NJ, Podshivalova K, Pamenter ME, Pyott SJ, Reznick J, Ruby JG, Salmon AB, Santos-Sacchi J, Sarko DK, Seluanov A, Shepard A, Smith M, Storey KB, Tian X, Vice EN, Viltard M, Watarai A, Wywial E, Yamakawa M, Zemlemerova ED, Zions M, Smith ESJ. (2022)
The naked truth: a comprehensive clarification and classification of current 'myths' in naked mole-rat biology
Biology Reviews 97, 115-140
Dornburg A, Wcisel DJ, Zapfe K, Ferraro E, Roupe-Abrams L, Thompson AW, Braasch I, Ota T, Yoder JA (2021)
Holosteans contextualize the role of the teleost genome duplication in promoting the rise of evolutionary novelties in the ray-finned fish innate immune system.
Immunogenetics 73: 479-497
Glenfield C, Innan H (2021)
Gene duplication and gene fusion are important drivers of tumourigenesis during cancer evolution
Genes 12, 1376
Thompson AW, ..., Ota T, ..., Braasch I (2021)
The bowfin genome illuminates the developmental evolution of ray-finned fishes
Nature Genetics 53: 1373–1384
Tsutaya T, Ogawa NO, Nomura T, Shimizu M, Ohkouchi N, Kuze N (2021)
Carbon and nitrogen stable isotopic offsets between diet and hair/feces in captive orangutans
Primates 62, 945–954.
Matsumae H, Ranacher P, Savage PE, Blasi DE, Currie TE, Kognebuchi K, Nishida N, Sato T, Tanabe H, Tajima A, Brown S, Stoneking M, Shimizu KK, Oota H, Bickel B (2021)
Exploring correlations in genetic and cultural variation across language families in northeast Asia
Science Advances 7, eabd9223
Nomano. FY, Mitsui H, Kimura MT (2021)
Assessment of putative species diversity of insect larvae occurring in bamboo galls by a DNA barcoding analysis
Entomological Science 24, 338-344
Kimura A, Yahashi S, Chatani F, Tanabe H (2021)
Identification of chromosome 17 trisomy in a cynomolgus monkey Macaca fascicularis by multicolor FISH techniques
Cytogenetic and Genome Research 161, 243-248
Morimoto H, Ueno M, Tanabe H, Kono T, Ogawa H (2021)
Progesterone depletion results in Lamin B1 loss and induction of cell death in mouse trophoblast giant cells
PLoS One 16, e0254674
Ito K (2021)
Modelling the apparent spread of science: Some insights from the history of science in Japan
David Ludwig, Inkeri Koskinen, Zinhle Mncube, Luana Poliseli, Luis Reyes-Galindo, eds., Global Epistemologies and Philosophies of Science (Routledge) pp. 265-273.
Hongo H , Kikuchi H, Nasu, H. (2021)
Beginning of pig management in Neolithic China: Comparison of domestication processes between northern and southern regions
Animal Frontiers 113 30-42
Fawcett JA, Innan H, Tsuchiya T, Sato F (2021)
The effects of the first and last mating age on the relationship between the advancing age and reproductive performance of Japanese Thoroughbred broodmares
J. Equine Sci. 32, 31-37
Mizuno F, Gojobori J, Kumagai M, Baba H, Taniguchi Y, Kondo O, Matsushita M, Matsushita T, Matsuda F, Higasa K, et al. (2021)
Population dynamics in the Japanese Archipelago since the Pleistocene revealed by the complete mitochondrial genome sequences
Sci. Rep. 11, 12018
Rentetzi M, Ito K (2021)
The material culture and politics of artifacts in nuclear diplomacy.
Centaurus 63, 233-243.
Yamada E, Hongo, H, Endo, H. (2021)
Analyzing historic human-suid relationships through dental microwear texture and geometric morphometric analyses of archaeological suid teeth in the Ryukyu Islands
Journal of Archeological Science 132, 105419
Ito K (2021)
Three tons of uranium from the International Atomic Energy Agency: diplomacy over nuclear fuel for the Japan Research Reactor-3 at the Board of Governors’ meetings, 1958–1959.
History and Technology 37, 67-89.
Cucchi T, Domont A, Harbers H, Evin A, Fors RA, Saﾃｱa M, Leduc C, Guidez A, Bridault A, Hongo H, Price M, Peters J, Briois F, Guilaine J, and Vigne J-D. (2021)
Bones geometric morphometrics illustrate 10th millennium cal. BP domestication of autochthonous Cypriot wild boar (Sus scrofa circeus nov. ssp)
Scientific Reports 11: 11435
Ito K, Rentetzi M (2021)
The co-production of nuclear science and diplomacy: towards a transnational understanding of nuclear things
History and Technology 37, 4-20
Ito K (2021)
The scientific object and material diplomacy: The shipment of radioisotopes from the United States to Japan in 1950
Centaurus 63, 296-319
Tsutaya T, Mackie M, Sawafuji R, Miyabe-Nishiwaki T, Olsen JV, Cappellini E (2021)
Faecal proteomics as a novel method to study mammalian behaviour and physiology
Molecular Ecology Resources 21, 1808~1819
Satoh S, Nishida Y, Saeki T, Kawasaka K, Kohda M, Awata S (2021)
The functional role of sibling aggression and 驕ｯｽｶ陟門st of a bad job驕ｯｽｶ strategies in cichlid juveniles
Behavioral Ecology 32, 488-499
Arikawa K, Nakatani Y, Koshitaka H, Kinoshita M (2021)
Foraging small white butterflies, Pieris rapae, search flowers using color vision.
Frontiers in Ecology and Evolution, DOI: 10.3389/fevo.2021.650069
Konishi S, Kariya F, Hamasaki K, Takayasu L, Ohtsuki H (2021)
Fecundability and Sterility by Age: Estimates Using Time to Pregnancy Data of Japanese Couples Trying to Conceive Their First Child with and without Fertility Treatment
International Journal of Environmental Research and Public Health 1810, 5486
Satoh S, Bshary R, Shibasaki M, Inaba S, Sogawa S, Hotta T, Awata S, Kohda M (2021)
Prosocial and antisocial choices in a monogamous cichlid with biparental care
Nature Communications 12, 1775
Yukinori Onishi, Davide Serpico (2022)
Homeostatic Property Cluster Theory without Homeostatic Mechanisms: Two Recent Attempts and their Costs
Journal for General Philosophy of Science 53, 61-82
Katsura Y, Ikemura T, Kajitani R, Toyoda A, Itoh T, Ogata M, Miura I, Wada K, Wada Y, Satta Y. (2021)
Comparative genomics of Glandirana rugosa using unsupervised AI reveals a high CG frequency
Life Science Alliance. 4: 10.26508/lsa.202000905
Lin KP, Chaw SM, Lo YH, Kinjo T, Tung CY, Cheng CH, Lau Q, Satta Y, Izawa M, Chen SF, Ko WY. (2021)
Genetic differentiation and demographic trajectory of the insular Formosan and Orii’s flying foxes
Journal of Heredity 112: 192–203
Iida, K(2021)
Postwar reconstruction of Japanese genetics: Kihara Hitoshi and the Rockefeller Foundation rice project in Cold War Asia.
Historia Scientiarum 30 no.3, 176-194.
Iida, K(2021)
Introduction: Transformation of East Asian scientific community through wartime to the Cold War: Cases from the bioscience fields.
Historia Scientiarum 30 no.3, 135-137.
Innan H, Vaiman D, Veitia RA (2021)
Predictable increase in female reproductive window: A simple model connecting age of reproduction, menopause and longevity
BioEssays 43, 2000233
Tanabe H, Kusakabe KT, Imai H, Yokota S, Kuraishi T, Hattori S, Kai C, Koga A (2021)
The heterochromatin block that functions as a rod cell microlens in Owl monkeys formed within a 15-Myr time span
Genome Biology and Evolution 13, evab021
Sakimura S, Nagayama S, Fukunaga M, Hu Q, Kitagawa A, Kobayashi Y, Hasegawa T, Noda M, Kouyama Y, Shimizu D, Saito T, Niida A, Tsuruda Y, Otsu H, Matsumoto Y, Uchida H, Masuda T, Sugimachi K, Sasaki S, Yamada K, Takahashi K, Innan H, Suzuki Y, Nakamura H, Totoki Y, Mizuno S, Ohshima M, Shibata T, Mimori K (2021)
Impaired tumor immune response in metastatic tumors is a selective pressure for neutral evolution in CRC cases
PLoS Genet. 17, e1009113
Nomano FY, Savage JL, Rollins LA, Griffith SC, Russell AF (2021)
Communal roosting shows dynamics predicted by direct and indirect nepotism in chestnut-crowned babblers
Behavioral Ecology and Sociobiology 75, 1-15
Sato M, Sasaki A (2021)
Evolution and maintenance of mutualism between tubeworms and sulfur-oxidizing bacteria
American Naturalist 197, 351-365
Sakamoto T, Innan H (2021)
Establishment of a new sex-determining allele driven by sexually antagonistic selection
G3 11, 1-14
van der Kooi C, Stavenga DG, Arikawa K, Belušič G, Kelber A(2021)
Evolution of insect colour vision – from spectral sensitivity to visual ecology.
Annual Review of Entomology 66:435-461

2021
2020

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